BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 7f512e36ae1c1b53bfb1b00b3d1e4509.SwissProt.fasta
           19 sequences; 4,275 total letters



Query= ACIAD2239

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9HV32 Response regulator protein PmrA [Pseudomonas aeruginosa (s...  190     1e-64
P52076 Transcriptional regulatory protein QseB [Escherichia coli ...  172     2e-57
Q8XBS3 Transcriptional regulatory protein QseB [Escherichia coli ...  171     6e-57
P66795 Transcriptional regulatory protein QseB [Salmonella typhim...  168     5e-56
P66796 Transcriptional regulatory protein QseB [Salmonella typhi]     168     5e-56
P45337 Transcriptional regulatory protein QseB [Haemophilus influ...  164     2e-54
Q70FH0 Transcriptional regulatory protein PmrA [Pectobacterium pa...  162     1e-53
O34903 Uncharacterized transcriptional regulatory protein YkoG [B...  160     1e-52
P30843 Transcriptional regulatory protein BasR [Escherichia coli ...  157     8e-52
P36556 Transcriptional regulatory protein BasR [Salmonella typhim...  155     9e-51
A6WZ81 Cell cycle response regulator CtrA [Brucella anthropi (str...  147     1e-47
Q8FZ93 Cell cycle response regulator CtrA [Brucella suis biovar 1...  146     4e-47
A5VRW9 Cell cycle response regulator CtrA [Brucella ovis (strain ...  146     4e-47
Q7CNV1 Cell cycle response regulator CtrA [Brucella melitensis bi...  146     4e-47
Q9ZHS1 Cell cycle response regulator CtrA [Brucella abortus biova...  146     4e-47
Q2YQA4 Cell cycle response regulator CtrA [Brucella abortus (stra...  146     4e-47
Q9I0I1 Response regulator protein CarR [Pseudomonas aeruginosa (s...  144     2e-46
I1WSZ4 Transcriptional activator protein IrlR [Burkholderia pseud...  142     1e-45
Q8GP20 Swarming motility regulation protein RssB [Serratia marces...  140     4e-45


>Q9HV32 Response regulator protein PmrA [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / 
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=221

 Score = 190 bits (483),  Expect = 1e-64
 Identities = 94/218 (43%), Positives = 143/218 (66%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRIL+AEDD+   + I++ L L+G  V+WV  G  A  A+   ++D ++LD GLP+ SG 
Sbjct  1    MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             +L  LR    +TPV+++TARD ++DRV GLD GA+DYL KPF L+EL AR+R+  R   
Sbjct  61   DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             +    L    + L+     V LSG+ VEL  +E+ +L  +++N  +V++R QLE +LY 
Sbjct  121  GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W  ++ESNAIEV ++ LR+K+G   I+T+RG+GY + +
Sbjct  181  WSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGYGIDQ  218


>P52076 Transcriptional regulatory protein QseB [Escherichia coli 
(strain K12)]
Length=219

 Score = 172 bits (435),  Expect = 2e-57
 Identities = 86/218 (39%), Positives = 138/218 (63%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRIL+ EDD+   + IK+ L   G+ VDW  +G     A+    YD ++LD  LP   G 
Sbjct  1    MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             +L   R+     PV+++TARD++++RV GL LGA+DYL KPF+L E++AR+ + +R   
Sbjct  61   DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             Q  + L   N+ L+   +   L+GE + L  KEF +L  +M+N  RV++R+ +E  LY 
Sbjct  121  GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W +E+ SNA+EV ++ LR+K+G+++I+T+ G+GY + E
Sbjct  181  WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE  218


>Q8XBS3 Transcriptional regulatory protein QseB [Escherichia coli 
O157:H7]
Length=219

 Score = 171 bits (432),  Expect = 6e-57
 Identities = 86/218 (39%), Positives = 136/218 (62%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRIL+ EDD+   + IK+ L   G+ VDW  +G     A+    YD ++LD  LP   G 
Sbjct  1    MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             +L   R+     PV+++TARD++ +RV GL LGA+DYL KPF+L E++AR+ + +R   
Sbjct  61   DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             Q  + L   N+ L+   +   L+GE + L  KEF +L  +M+N  RV+ R+ +E  LY 
Sbjct  121  GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W +E+ SNA+EV ++ LR+K+G+++I+T+ G+GY + E
Sbjct  181  WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE  218


>P66795 Transcriptional regulatory protein QseB [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=219

 Score = 168 bits (426),  Expect = 5e-56
 Identities = 85/218 (39%), Positives = 133/218 (61%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRIL+ EDD    + IK+ L   G+ VDW   G     A+    YD ++LD  LP   G 
Sbjct  1    MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             +L   R+     PV+++TARD++++RV GL LGA+DYL KPF+L E++AR+ + +R   
Sbjct  61   DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             Q  S L    + LN  +    L+GE + L  KEF +L  +++N  RV+ R+ +E  LY 
Sbjct  121  GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W D++ SNA+EV ++ LR+K+G+ +I+T+ G+GY + +
Sbjct  181  WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD  218


>P66796 Transcriptional regulatory protein QseB [Salmonella typhi]
Length=219

 Score = 168 bits (426),  Expect = 5e-56
 Identities = 85/218 (39%), Positives = 133/218 (61%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRIL+ EDD    + IK+ L   G+ VDW   G     A+    YD ++LD  LP   G 
Sbjct  1    MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             +L   R+     PV+++TARD++++RV GL LGA+DYL KPF+L E++AR+ + +R   
Sbjct  61   DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             Q  S L    + LN  +    L+GE + L  KEF +L  +++N  RV+ R+ +E  LY 
Sbjct  121  GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W D++ SNA+EV ++ LR+K+G+ +I+T+ G+GY + +
Sbjct  181  WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD  218


>P45337 Transcriptional regulatory protein QseB [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=221

 Score = 164 bits (416),  Expect = 2e-54
 Identities = 83/218 (38%), Positives = 135/218 (62%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRIL+ EDD      ++  L   G+ VDW   G   +AA+    YD ++LD  LPK  G 
Sbjct  1    MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL   R +    PV+++TARD++ +RV GL  GA+DYL KPF+L E++AR+++ IR   
Sbjct  61   EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++    ++L+   + V L+ + + LT++E+K+L   M N +RV++R  +E  L +
Sbjct  121  GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W +EI S A++V IY LR+K+G  +I+T+ G+GY + +
Sbjct  181  WDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQ  218


>Q70FH0 Transcriptional regulatory protein PmrA [Pectobacterium 
parmentieri]
Length=222

 Score = 162 bits (410),  Expect = 1e-53
 Identities = 90/218 (41%), Positives = 130/218 (60%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            M++LI EDD    E +   L  +GY  D       A A I    Y  ++LD GLP   G 
Sbjct  1    MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             +L   RK+    PV+++TARD + DRV+GLD+GA+DYL KPF+L EL AR+R+ IR  Q
Sbjct  61   ALLSRWRKNNYQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
               +S +   NI L+  ++ V L  + V LT KEF +L +++      V RE L   +YA
Sbjct  121  GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLVLKAGYQVHRELLHQDIYA  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
            W D+  SN++EV I+ LR+KIG + I+T+RG GY +++
Sbjct  181  WNDDPSSNSLEVHIHNLRQKIGKDRIRTLRGFGYLLTK  218


>O34903 Uncharacterized transcriptional regulatory protein YkoG 
[Bacillus subtilis (strain 168)]
Length=228

 Score = 160 bits (404),  Expect = 1e-52
 Identities = 91/219 (42%), Positives = 140/219 (64%), Gaps = 7/219 (3%)

Query  3    ILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGDQV  62
            ILI ED+   A  ++  LE +GY V     G   + A  +  Y  +LLD  LP  SG +V
Sbjct  6    ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV  65

Query  63   LLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIR---SM  119
            L  LRK  S TPVI++TARDSI D+VTGLD+GANDY+ KPF +EEL ARIR+ +R   + 
Sbjct  66   LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK  125

Query  120  QQQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLY  179
             + + + L + ++ +N + + V+   + VELT +EF +L  M+++P++V+TREQ+ S+++
Sbjct  126  TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW  185

Query  180  AWGDEIESNAIEVFIYQLRKKIGTNY----IKTIRGLGY  214
             +    ++N ++V+I  +RKK+   Y    I TIRG+GY
Sbjct  186  GFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGY  224


>P30843 Transcriptional regulatory protein BasR [Escherichia coli 
(strain K12)]
Length=222

 Score = 157 bits (398),  Expect = 8e-52
 Identities = 85/216 (39%), Positives = 130/216 (60%), Gaps = 0/216 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            M+ILI EDD    + +    + +GY  D V     A  +++   Y  ++LD GLP   G 
Sbjct  1    MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
              L  +R+ +   PV+++TARD+++D++ GLD+GA+DYLVKPF+LEEL ARIR+ +R   
Sbjct  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             Q +S L   N+ LN   + V + GE + LT KE+ +L ++M      V RE L + +Y 
Sbjct  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRM  216
            W +E  +N +EV I+ LR K+G   I+T+RG GY +
Sbjct  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216


>P36556 Transcriptional regulatory protein BasR [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=222

 Score = 155 bits (391),  Expect = 9e-51
 Identities = 84/216 (39%), Positives = 128/216 (59%), Gaps = 0/216 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            M+ILI EDD    + +    + +GY  D V     A  +++   Y  ++LD GLP   G 
Sbjct  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
              L  +R+ +   PV+++TA D+++DR+TGLD+GA+DYLVKPF+LEEL ARIR+ +R   
Sbjct  61   HFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             Q +S L   N+ LN         G+ + LT KE+ +L ++M      V RE L + +Y 
Sbjct  121  NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRM  216
            W +E  +N +EV I+ LR K+G + I+T+RG GY +
Sbjct  181  WDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYML  216


>A6WZ81 Cell cycle response regulator CtrA [Brucella anthropi 
(strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 
3331 / NBRC 15819 / NCTC 12168 / Alc 37)]
Length=232

 Score = 147 bits (371),  Expect = 1e-47
 Identities = 85/223 (38%), Positives = 131/223 (59%), Gaps = 5/223 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ EDD + A+SI+  L+ + + V   D G+  I   K +DYD ILLD  LP  SG 
Sbjct  1    MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL TLR  +  TP+++++    I D+V GL  GA+DY+ KPF  +EL ARI + +R  +
Sbjct  61   EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++   ++ +N   K V++SG+ V LT KE+++L  +       +T+E   + LY 
Sbjct  121  GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE  218
              DE E   I+VFI +LRKK+       +YI+T+ G GY + E
Sbjct  181  GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLRE  223


>Q8FZ93 Cell cycle response regulator CtrA [Brucella suis biovar 
1 (strain 1330)]
Length=232

 Score = 146 bits (368),  Expect = 4e-47
 Identities = 84/223 (38%), Positives = 131/223 (59%), Gaps = 5/223 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ EDD + A+SI+  L+ + + V   D G+  I   K +DYD ILLD  LP  SG 
Sbjct  1    MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL TLR  +  TP+++++    I D+V GL  GA+DY+ KPF  +EL ARI + +R  +
Sbjct  61   EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++   ++ +N   K V+++G+ V LT KE+++L  +       +T+E   + LY 
Sbjct  121  GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE  218
              DE E   I+VFI +LRKK+       +YI+T+ G GY + E
Sbjct  181  GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE  223


>A5VRW9 Cell cycle response regulator CtrA [Brucella ovis (strain 
ATCC 25840 / 63/290 / NCTC 10512)]
Length=232

 Score = 146 bits (368),  Expect = 4e-47
 Identities = 84/223 (38%), Positives = 131/223 (59%), Gaps = 5/223 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ EDD + A+SI+  L+ + + V   D G+  I   K +DYD ILLD  LP  SG 
Sbjct  1    MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL TLR  +  TP+++++    I D+V GL  GA+DY+ KPF  +EL ARI + +R  +
Sbjct  61   EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++   ++ +N   K V+++G+ V LT KE+++L  +       +T+E   + LY 
Sbjct  121  GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE  218
              DE E   I+VFI +LRKK+       +YI+T+ G GY + E
Sbjct  181  GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE  223


>Q7CNV1 Cell cycle response regulator CtrA [Brucella melitensis 
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)]
Length=232

 Score = 146 bits (368),  Expect = 4e-47
 Identities = 84/223 (38%), Positives = 131/223 (59%), Gaps = 5/223 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ EDD + A+SI+  L+ + + V   D G+  I   K +DYD ILLD  LP  SG 
Sbjct  1    MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL TLR  +  TP+++++    I D+V GL  GA+DY+ KPF  +EL ARI + +R  +
Sbjct  61   EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++   ++ +N   K V+++G+ V LT KE+++L  +       +T+E   + LY 
Sbjct  121  GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE  218
              DE E   I+VFI +LRKK+       +YI+T+ G GY + E
Sbjct  181  GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE  223


>Q9ZHS1 Cell cycle response regulator CtrA [Brucella abortus biovar 
1 (strain 9-941)]
Length=232

 Score = 146 bits (368),  Expect = 4e-47
 Identities = 84/223 (38%), Positives = 131/223 (59%), Gaps = 5/223 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ EDD + A+SI+  L+ + + V   D G+  I   K +DYD ILLD  LP  SG 
Sbjct  1    MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL TLR  +  TP+++++    I D+V GL  GA+DY+ KPF  +EL ARI + +R  +
Sbjct  61   EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++   ++ +N   K V+++G+ V LT KE+++L  +       +T+E   + LY 
Sbjct  121  GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE  218
              DE E   I+VFI +LRKK+       +YI+T+ G GY + E
Sbjct  181  GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE  223


>Q2YQA4 Cell cycle response regulator CtrA [Brucella abortus (strain 
2308)]
Length=232

 Score = 146 bits (368),  Expect = 4e-47
 Identities = 84/223 (38%), Positives = 131/223 (59%), Gaps = 5/223 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ EDD + A+SI+  L+ + + V   D G+  I   K +DYD ILLD  LP  SG 
Sbjct  1    MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            +VL TLR  +  TP+++++    I D+V GL  GA+DY+ KPF  +EL ARI + +R  +
Sbjct  61   EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                S++   ++ +N   K V+++G+ V LT KE+++L  +       +T+E   + LY 
Sbjct  121  GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG  180

Query  181  WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE  218
              DE E   I+VFI +LRKK+       +YI+T+ G GY + E
Sbjct  181  GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE  223


>Q9I0I1 Response regulator protein CarR [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / 
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=223

 Score = 144 bits (362),  Expect = 2e-46
 Identities = 87/220 (40%), Positives = 127/220 (58%), Gaps = 9/220 (4%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MR+L+ ED +  A+ + + L   GY VDW+  G  A        YD I+LD GLP   G 
Sbjct  1    MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARI-----RSH  115
            ++L   R     TPV+++TAR S ++R+ GL  GA+DYL KPF  EEL+ RI     R+H
Sbjct  61   EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH  120

Query  116  IRSMQQQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLE  175
              + Q Q+++      + L+ Q + V L+G  V+LTA EF++L   M +P +V+++  L 
Sbjct  121  GLANQSQLEA----AGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLA  176

Query  176  STLYAWGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYR  215
              LY    E +SN IEV +  LR+K+G   I+T RG GYR
Sbjct  177  EHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYR  216


>I1WSZ4 Transcriptional activator protein IrlR [Burkholderia pseudomallei 
(strain 1026b)]
Length=229

 Score = 142 bits (357),  Expect = 1e-45
 Identities = 83/218 (38%), Positives = 126/218 (58%), Gaps = 5/218 (2%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            MRILI ED+      ++  L   G++ DWV+ G   +   +  +YD I+LD  LP   G 
Sbjct  1    MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
             VL  LR+  S TPV+ +TARD + DRV GL+LGA+DY+VKPF   EL AR+RS +R  Q
Sbjct  61   TVLERLRRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ  119

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
             +  ++L   ++EL+   +     G++V LTAKEF +L  +M+    ++ R  + S ++ 
Sbjct  120  ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD  179

Query  181  WGDEIESNAIEVFIYQLRKKIGTNY----IKTIRGLGY  214
                 ++N ++  I +LR KI   Y    I T+RG+GY
Sbjct  180  MNFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGY  217


>Q8GP20 Swarming motility regulation protein RssB [Serratia marcescens]
Length=219

 Score = 140 bits (353),  Expect = 4e-45
 Identities = 80/218 (37%), Positives = 124/218 (57%), Gaps = 0/218 (0%)

Query  1    MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD  60
            M IL+ EDD+   +++   LEL G+ + WV     A   +    +D +LLD  LP   G 
Sbjct  1    MNILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGL  60

Query  61   QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ  120
            Q L+  R      P+I++TARD I   V  LD GAND+L KPF+L EL +R+++  R M 
Sbjct  61   QKLIAWRAAGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMA  120

Query  121  QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA  180
                       + L+  +  V L  EL+ L+ KE+ +LH++M+    VV +  LE  L+ 
Sbjct  121  GFASQTWSLGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFG  180

Query  181  WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE  218
             GD +ESN++EV ++ LR+KIG + + T+RG+GY + +
Sbjct  181  HGDSVESNSLEVHMHNLRRKIGKDRVITVRGIGYLLKK  218



Lambda      K        H        a         alpha
   0.322    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 615429


  Database: 7f512e36ae1c1b53bfb1b00b3d1e4509.SwissProt.fasta
    Posted date:  May 20, 2024  8:04 PM
  Number of letters in database: 4,275
  Number of sequences in database:  19



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40