BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c1a6ca21c138d6379e7bbe7373b02dbe.SwissProt.fasta
16 sequences; 4,950 total letters
Query= ACIAD2384
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
P0A9G1 HTH-type transcriptional regulator MetR [Shigella flexneri] 229 3e-77
P0A9G0 HTH-type transcriptional regulator MetR [Escherichia coli ... 229 3e-77
P0A9F9 HTH-type transcriptional regulator MetR [Escherichia coli ... 229 3e-77
P0A2Q5 HTH-type transcriptional regulator MetR [Salmonella typhi] 227 2e-76
P0A2Q4 HTH-type transcriptional regulator MetR [Salmonella typhim... 227 2e-76
P45349 HTH-type transcriptional regulator MetR [Haemophilus influ... 220 7e-74
Q8KA72 HTH-type transcriptional regulator MetR [Buchnera aphidico... 197 8e-65
Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis... 90.9 2e-24
Q8X4M5 HTH-type transcriptional regulator CynR [Escherichia coli ... 84.3 4e-22
P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necat... 82.8 2e-21
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 80.5 1e-20
Q47141 Hca operon transcriptional activator HcaR [Escherichia col... 79.0 3e-20
P52669 HTH-type transcriptional regulator TtuA [Agrobacterium vitis] 79.0 4e-20
B4E8S9 HTH-type transcriptional regulator SsuR [Burkholderia ceno... 77.4 1e-19
Q47083 HTH-type transcriptional regulator cbl [Escherichia coli (... 77.0 2e-19
P07774 HTH-type transcriptional regulator CatM [Acinetobacter bay... 75.1 8e-19
>P0A9G1 HTH-type transcriptional regulator MetR [Shigella flexneri]
Length=317
Score = 229 bits (584), Expect = 3e-77
Identities = 122/291 (42%), Positives = 178/291 (61%), Gaps = 8/291 (3%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSN 60
M+E++HLKTL ALR GSL AAA L T SA+SHQ +L+ G + R+S+P+ F+
Sbjct 1 MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP 60
Query 61 VGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G+ LL+LA+ +LPQI A + Q R+ + ECHSC WL P L + + +P
Sbjct 61 QGEILLQLANQVLPQISQA---LQACNEPQQTRLRIAIECHSCIQWLTPALENFHKNWPQ 117
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAE 180
V++DF SG +P LQ GE DL++T+D + G+ Y P+F+YE RLVL+ HPL
Sbjct 118 VEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDYEVRLVLAPDHPLAAKT 177
Query 181 KVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISA 240
++T E+LA +TL+ YPV + RLD+ H PA + P +++ D T +LIQ+VA+ GI+A
Sbjct 178 RITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSP-SLKSVDNTLLLIQMVAARMGIAA 236
Query 241 LPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLK 291
LP WVV +E++G V ++ L GL LYA R E+ + E F++
Sbjct 237 LPHWVVESFERQGLVVTKTL----GEGLWSRLYAAVRDGEQRQPVTEAFIR 283
>P0A9G0 HTH-type transcriptional regulator MetR [Escherichia coli
O157:H7]
Length=317
Score = 229 bits (584), Expect = 3e-77
Identities = 122/291 (42%), Positives = 178/291 (61%), Gaps = 8/291 (3%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSN 60
M+E++HLKTL ALR GSL AAA L T SA+SHQ +L+ G + R+S+P+ F+
Sbjct 1 MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP 60
Query 61 VGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G+ LL+LA+ +LPQI A + Q R+ + ECHSC WL P L + + +P
Sbjct 61 QGEILLQLANQVLPQISQA---LQACNEPQQTRLRIAIECHSCIQWLTPALENFHKNWPQ 117
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAE 180
V++DF SG +P LQ GE DL++T+D + G+ Y P+F+YE RLVL+ HPL
Sbjct 118 VEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDYEVRLVLAPDHPLAAKT 177
Query 181 KVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISA 240
++T E+LA +TL+ YPV + RLD+ H PA + P +++ D T +LIQ+VA+ GI+A
Sbjct 178 RITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSP-SLKSVDNTLLLIQMVAARMGIAA 236
Query 241 LPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLK 291
LP WVV +E++G V ++ L GL LYA R E+ + E F++
Sbjct 237 LPHWVVESFERQGLVVTKTL----GEGLWSRLYAAVRDGEQRQPVTEAFIR 283
>P0A9F9 HTH-type transcriptional regulator MetR [Escherichia coli
(strain K12)]
Length=317
Score = 229 bits (584), Expect = 3e-77
Identities = 122/291 (42%), Positives = 178/291 (61%), Gaps = 8/291 (3%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSN 60
M+E++HLKTL ALR GSL AAA L T SA+SHQ +L+ G + R+S+P+ F+
Sbjct 1 MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP 60
Query 61 VGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G+ LL+LA+ +LPQI A + Q R+ + ECHSC WL P L + + +P
Sbjct 61 QGEILLQLANQVLPQISQA---LQACNEPQQTRLRIAIECHSCIQWLTPALENFHKNWPQ 117
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAE 180
V++DF SG +P LQ GE DL++T+D + G+ Y P+F+YE RLVL+ HPL
Sbjct 118 VEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDYEVRLVLAPDHPLAAKT 177
Query 181 KVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISA 240
++T E+LA +TL+ YPV + RLD+ H PA + P +++ D T +LIQ+VA+ GI+A
Sbjct 178 RITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSP-SLKSVDNTLLLIQMVAARMGIAA 236
Query 241 LPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLK 291
LP WVV +E++G V ++ L GL LYA R E+ + E F++
Sbjct 237 LPHWVVESFERQGLVVTKTL----GEGLWSRLYAAVRDGEQRQPVTEAFIR 283
>P0A2Q5 HTH-type transcriptional regulator MetR [Salmonella typhi]
Length=317
Score = 227 bits (579), Expect = 2e-76
Identities = 123/291 (42%), Positives = 179/291 (62%), Gaps = 8/291 (3%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSN 60
M+EI+HLKTL ALR GSL AAA L T SA+SHQ +L+ G + R+S+P+ F+
Sbjct 1 MIEIKHLKTLQALRNSGSLAAAAAVLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP 60
Query 61 VGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G+ LL+LA+ +LPQI A + Q R+ + ECHSC WL P L +R +P
Sbjct 61 QGEVLLQLANQVLPQISRA---LQACNEPQQTRLRIAIECHSCIQWLTPALENFRASWPQ 117
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAE 180
V++DF SG +P LQ GE DL++T+D + G+ Y P+F++E RLVL+ HPL
Sbjct 118 VEMDFTSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDFEVRLVLAPDHPLASKT 177
Query 181 KVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISA 240
++T E+LA +TL+ YPV + RLD+ H PA I P +++ D T +LIQ+VA+ GI+A
Sbjct 178 QITPEDLASETLLIYPVQRSRLDVWRHFLQPAGISPL-LKSVDNTLLLIQMVAARMGIAA 236
Query 241 LPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLK 291
LP WVV E++G V ++ L +GL LYA R ++ ++ E F++
Sbjct 237 LPHWVVESVERQGLVVTKTL----GDGLWSRLYAAVRDGDQRQAVTEAFIR 283
>P0A2Q4 HTH-type transcriptional regulator MetR [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=317
Score = 227 bits (579), Expect = 2e-76
Identities = 123/291 (42%), Positives = 179/291 (62%), Gaps = 8/291 (3%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSN 60
M+EI+HLKTL ALR GSL AAA L T SA+SHQ +L+ G + R+S+P+ F+
Sbjct 1 MIEIKHLKTLQALRNSGSLAAAAAVLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP 60
Query 61 VGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G+ LL+LA+ +LPQI A + Q R+ + ECHSC WL P L +R +P
Sbjct 61 QGEVLLQLANQVLPQISRA---LQACNEPQQTRLRIAIECHSCIQWLTPALENFRASWPQ 117
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAE 180
V++DF SG +P LQ GE DL++T+D + G+ Y P+F++E RLVL+ HPL
Sbjct 118 VEMDFTSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDFEVRLVLAPDHPLASKT 177
Query 181 KVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISA 240
++T E+LA +TL+ YPV + RLD+ H PA I P +++ D T +LIQ+VA+ GI+A
Sbjct 178 QITPEDLASETLLIYPVQRSRLDVWRHFLQPAGISPL-LKSVDNTLLLIQMVAARMGIAA 236
Query 241 LPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLK 291
LP WVV E++G V ++ L +GL LYA R ++ ++ E F++
Sbjct 237 LPHWVVESVERQGLVVTKTL----GDGLWSRLYAAVRDGDQRQAVTEAFIR 283
>P45349 HTH-type transcriptional regulator MetR [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=309
Score = 220 bits (561), Expect = 7e-74
Identities = 114/288 (40%), Positives = 176/288 (61%), Gaps = 4/288 (1%)
Query 2 LEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNV 61
LE RHLKTLLAL+E GS+ AA + LT SA+SHQ+K ++ +G+ + R+S P+ F++
Sbjct 6 LEFRHLKTLLALKETGSVSLAAKRVYLTQSALSHQIKLIEEQFGLPLFERKSNPLRFTSA 65
Query 62 GQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
G+RL++LA++++P++ A+ D+ R+ HG G++ + ECH+CFDWLMP ++++RQ + V
Sbjct 66 GERLIRLANEVMPKVIDAERDLARVKHGDAGQLRIAVECHTCFDWLMPAMDEFRQHWGLV 125
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEK 181
+LD SGF +P LL + D I ++ + + P+F YE + S H L +
Sbjct 126 ELDIVSGFHTDPVGLLLSHRADWAIVSEIEHNDDVIFKPLFSYEMVGICSKNHSLAEKDI 185
Query 182 VTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISAL 241
E+ ++T +TYPV LD+ + I P RTT+LT +IQLVAS RGI+ +
Sbjct 186 WEAEDFIDETWVTYPVPDDMLDLWRKVLKSKGINPTR-RTTELTIAMIQLVASRRGIATI 244
Query 242 PDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGF 289
P W Y +KG+V +R+ V+ GL LYA R E++ SY E F
Sbjct 245 PYWAALPYLEKGYVVARK---VTKEGLYSNLYAAIRKEDESLSYLEDF 289
>Q8KA72 HTH-type transcriptional regulator MetR [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=312
Score = 197 bits (501), Expect = 8e-65
Identities = 112/291 (38%), Positives = 178/291 (61%), Gaps = 9/291 (3%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSN 60
M+EI+HL+TL AL+ +GSL AAA L T SAISHQ EL+ G ++ R+S P+ F+
Sbjct 1 MIEIKHLRTLQALKNNGSLSAAAIQLHQTQSAISHQFNELEKKLGFKLFIRKSNPIKFTA 60
Query 61 VGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G+ LL+L+ +ILP+I A + + H I + ECHSC WL P L +++++P
Sbjct 61 QGEILLQLSKEILPKIHKAIQNCKK-THQMI--IKLAIECHSCIQWLTPALKIFQKKWPR 117
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLV-RA 179
V++DF S +P LQ G+ D+++T++ + + YFPIF++E RLVLS HPL +
Sbjct 118 VEIDFYSDMIFSPQPSLQQGKLDIVLTSEVLPRSNLFYFPIFDFEVRLVLSPNHPLAQKK 177
Query 180 EKVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGIS 239
+ E+L + L+ YPV + +LDI PA I P + + T +LIQ+VA+ GI+
Sbjct 178 HNILPEDLISEILMIYPVKRDKLDIWKFFLQPAGIIP-IFKNVNNTLLLIQMVAAKMGIT 236
Query 240 ALPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFL 290
ALP WVV+ +E++G V +++L +G+ + LYA R ++++ + F+
Sbjct 237 ALPHWVVDTFEKQGLVVTKKL----GDGIWKRLYAAIRDGDQKELIIKNFI 283
>Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis
(strain 168)]
Length=302
Score = 90.9 bits (224), Expect = 2e-24
Identities = 69/269 (26%), Positives = 122/269 (45%), Gaps = 8/269 (3%)
Query 2 LEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNV 61
+E+RHL+ +A+ E AA L +T +S Q+K+L+ GV ++ R R V +
Sbjct 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60
Query 62 GQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
G+ L L QI R G+ G +V + +++L P++ +YR+++P V
Sbjct 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEK 181
++ + + L G D+ I P+ + L L HPL E
Sbjct 121 KIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPLTSKES 180
Query 182 VTVEELAEQTLITYPVDKHRLDIMAHLFI----PANIQPKEIRTTDLTQMLIQLVASGRG 237
+T+E+L ++ +IT V K + FI A +P ++ QM+I LV++G G
Sbjct 181 ITIEDLRDEPIIT--VAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIG 238
Query 238 ISALPDWVVNEYEQKGWVTSRRLDCVSAN 266
++ +P + VT R++D + N
Sbjct 239 MTFVPSSAKKLFNLD--VTYRKMDQIQLN 265
Score = 20.0 bits (40), Expect = 1.0
Identities = 24/118 (20%), Positives = 49/118 (42%), Gaps = 11/118 (9%)
Query 109 PLLNQYRQQYPDVDLDFASGFEA---NPHDLLQTGEFDLLITADPIALKGIEYFPIFEYE 165
P++ ++ +P + +DF E P+ + + E+ ++I + G+ + P
Sbjct 190 PIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGI-GMTFVP----S 244
Query 166 SRLVLSNTHPLVRAEKVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTD 223
S L N R K+ +L + +I Y D H ++ H +N Q + +D
Sbjct 245 SAKKLFNLDVTYR--KMDQIQLNAEWVIAYRKDNHN-PLIKHFIHISNCQQTRTKESD 299
>Q8X4M5 HTH-type transcriptional regulator CynR [Escherichia coli
O157:H7]
Length=299
Score = 84.3 bits (207), Expect = 4e-22
Identities = 59/249 (24%), Positives = 115/249 (46%), Gaps = 6/249 (2%)
Query 5 RHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNVGQR 64
RH+ LA+ EHGS AA+ L ++ A+S Q+++L+ GV + +R R + ++ G+
Sbjct 4 RHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIHLTDAGEV 63
Query 65 LLKLADDILPQI---QIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
+ A L ++ + A D+ + G RI + S F + PL+ + +YP +
Sbjct 64 WRQYASRALQELGAGKRAIHDVADLTRGSL-RIAVTPTFTSYF--IGPLMADFYARYPGI 120
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEK 181
L + DLL E D+ I P+ L +E P+ LV++ HPL E+
Sbjct 121 TLQLQEMSQEKIEDLLCRDELDVGIAFAPVHLPELEAIPLLTESLALVVAQHHPLAACEQ 180
Query 182 VTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISAL 241
V + L ++ L+ + + + H A + P+ + + +++L+ + L
Sbjct 181 VALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLL 240
Query 242 PDWVVNEYE 250
P + +++
Sbjct 241 PAAIATQHD 249
>P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necator
(strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442
/ H16 / Stanier 337)]
Length=317
Score = 82.8 bits (203), Expect = 2e-21
Identities = 66/240 (28%), Positives = 105/240 (44%), Gaps = 1/240 (0%)
Query 2 LEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNV 61
L +R L+ + + H S V AA +L LT A+S Q+K+L+ G+ + R +T +
Sbjct 8 LTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEP 67
Query 62 GQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
G RLL A IL +++ A+ + + + G I S + + LL + +P V
Sbjct 68 GDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIGLISTSKY-FAPKLLAGFTALHPGV 126
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEK 181
DL A G LLQ DL + P PI + LV S HPL A+
Sbjct 127 DLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVSEPIAAHPHVLVASPRHPLHDAKG 186
Query 182 VTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISAL 241
++EL +T + + ++F P ++ T + + Q V +G GIS L
Sbjct 187 FDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGMGISLL 246
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 80.5 bits (197), Expect = 1e-20
Identities = 57/249 (23%), Positives = 114/249 (46%), Gaps = 6/249 (2%)
Query 5 RHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNVGQR 64
RH+ LA+ EHGS AA+ L ++ A+S Q+++L+ GV + +R R + ++ G+
Sbjct 4 RHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEV 63
Query 65 LLKLADDILPQI---QIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
+ A L ++ + A D+ + G RI + S F + PL+ + +YP +
Sbjct 64 WRQYASRALQELGAGKRAIHDVADLTRGSL-RIAVTPTFTSYF--IGPLMADFYARYPSI 120
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEK 181
L + D+L E D+ I P+ +E P+ LV++ HPL E+
Sbjct 121 TLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALVVAQHHPLAVHEQ 180
Query 182 VTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISAL 241
V + L ++ L+ + + + H A + P+ + + +++L+ + L
Sbjct 181 VALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLL 240
Query 242 PDWVVNEYE 250
P + +++
Sbjct 241 PAAIATQHD 249
>Q47141 Hca operon transcriptional activator HcaR [Escherichia
coli (strain K12)]
Length=296
Score = 79.0 bits (193), Expect = 3e-20
Identities = 60/248 (24%), Positives = 118/248 (48%), Gaps = 3/248 (1%)
Query 2 LEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNV 61
+E+RHL+ +A+ + + AA L + ++S Q+++L++ GV ++ R R V +
Sbjct 1 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAA 60
Query 62 GQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
G+ L+ A IL Q + A+ +IV + ++ + + L +L +R + PD
Sbjct 61 GECFLQDALAILEQAENAKLRARKIVQ-EDRQLTIGFVPSAEVNLLPKVLPMFRLRQPDT 119
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEK 181
++ S + ++ GE D+ + P+ I+Y +F+ +VL HPL ++
Sbjct 120 LIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKE 179
Query 182 VTVEELAEQTLI-TYPVDKHRL-DIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGIS 239
+T +L + T PV L I+ F N QP ++ + + LV G G++
Sbjct 180 ITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVT 239
Query 240 ALPDWVVN 247
+P ++ N
Sbjct 240 LIPGYMNN 247
>P52669 HTH-type transcriptional regulator TtuA [Agrobacterium
vitis]
Length=304
Score = 79.0 bits (193), Expect = 4e-20
Identities = 59/247 (24%), Positives = 110/247 (45%), Gaps = 5/247 (2%)
Query 2 LEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNV 61
+E+ LK +A E AA + + P+++ L+ L+ G +++R +R V +
Sbjct 1 MELEQLKCFVAAAEELHFGRAAQKMGILPASLGRHLRLLEESLGTRLMSRTTRSVALTED 60
Query 62 GQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDV 121
G LL+ +L ++Q + Q + + + + PLL+ +R+++P +
Sbjct 61 GVALLEEVRPLLHRLQTLAEEFRSRKTQQATVLRIGAIDSAAAGLIPPLLHDFRERFPGI 120
Query 122 DLDFASGFEANPHDLLQTGEFDLLITADPIAL-KGIEYFPIFEYESRLVLSNTHPLVRAE 180
L G D++ L + + + + + L THPL E
Sbjct 121 ITQLVEDKSIRLIPKLIAGRLDIVFIRPRDGLNRNLVVRTLTQETPVIALPVTHPLANRE 180
Query 181 KVTVEELAEQTLITYPVDK---HRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRG 237
+++V+EL E+ LI P + H D+ LF A + P+ +T D Q +I LVA+G G
Sbjct 181 RISVDELREEPLIV-PERRSRPHSYDLTMKLFEDAGLHPRIAQTADEKQTIINLVAAGIG 239
Query 238 ISALPDW 244
+ +P W
Sbjct 240 SAIVPRW 246
>B4E8S9 HTH-type transcriptional regulator SsuR [Burkholderia
cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC
13227 / J2315 / CF5610)]
Length=308
Score = 77.4 bits (189), Expect = 1e-19
Identities = 61/247 (25%), Positives = 113/247 (46%), Gaps = 4/247 (2%)
Query 12 ALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVT-FSNVGQRLLKLAD 70
A+R++ +L AN L + S +S Q+K+L+ GV++ RR + +T + G+ + +L +
Sbjct 12 AVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLTEPGKAVHQLIE 71
Query 71 DILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMP-LLNQYRQQYPDVDLDFASGF 129
+L + + + +G +V ++ H+ + +P ++ Q+ +P V L G
Sbjct 72 RMLLDAENLRRVARQFADQDSGHLVVATT-HTQARYALPKVIRQFTDVFPKVHLALRQGS 130
Query 130 EANPHDLLQTGEFDLLITADPI-ALKGIEYFPIFEYESRLVLSNTHPLVRAEKVTVEELA 188
++ GE DL I+ + + I FP + + +V+ HPLV E +T+EE+A
Sbjct 131 PQQIAQMILNGEADLGISTEALDRYPDIVTFPCYSWHHTVVVPKGHPLVGRENLTLEEIA 190
Query 189 EQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISALPDWVVNE 248
E +ITY D + F A P + T ++ V G GI + +
Sbjct 191 EYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGIGVVAAMAYDP 250
Query 249 YEQKGWV 255
G V
Sbjct 251 QRDTGLV 257
>Q47083 HTH-type transcriptional regulator cbl [Escherichia coli
(strain K12)]
Length=316
Score = 77.0 bits (188), Expect = 2e-19
Identities = 67/286 (23%), Positives = 134/286 (47%), Gaps = 14/286 (5%)
Query 12 ALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEV-VNRRSRPVTFSNVGQRLLKLAD 70
A R+ +L AN L + S +S ++EL+ G+E+ V R R + + G+ LL +A+
Sbjct 12 AARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMTEPGKALLVIAE 71
Query 71 DILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMP-LLNQYRQQYPDVDLDFASGF 129
IL + + + + T ++ + H+ + +P ++ +R+ +P+V L+ G
Sbjct 72 RILNEASNVRR-LADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGT 130
Query 130 EANPHDLLQTGEFDLLITADPIALKG-IEYFPIFEYESRLVLSNTHPLVRAEKVTVEELA 188
LLQ GE D+ I ++ ++ + FP F + L++ + HPL + +T+E +A
Sbjct 131 PQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIA 190
Query 189 EQTLITYP---VDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISALPDWV 245
+ LITY + R+D F + + + + ++ VA G GI + +
Sbjct 191 KWPLITYRQGITGRSRID---DAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQS 247
Query 246 VNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLK 291
E E++ + AN T++ G + + +++Y FL+
Sbjct 248 SGEQEEENLIRLDTRHLFDAN----TVWLGLKRGQLQRNYVWRFLE 289
>P07774 HTH-type transcriptional regulator CatM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=303
Score = 75.1 bits (183), Expect = 8e-19
Identities = 59/246 (24%), Positives = 112/246 (46%), Gaps = 7/246 (3%)
Query 2 LEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNV 61
+E+RHL+ + + E S+ AA LC+ +S Q+++L+ G+++ R RP +
Sbjct 1 MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEA 60
Query 62 GQRLLKLADDILPQIQIAQSDITRIVH-GQTGRIVFSSECHSCFDWLMPLLNQYRQQYPD 120
G + A IL A S RI QT RI + S + L ++ +RQQ P+
Sbjct 61 GMFFYQHAVQILTHTAQASSMAKRIATVSQTLRIGYVSSL--LYGLLPEIIYLFRQQNPE 118
Query 121 VDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPL--VR 178
+ ++ + + L+ G+ DL I I + + + +L + H L
Sbjct 119 IHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRRIVLHKEQLKLAIHKHHHLNQFA 178
Query 179 AEKVTVEELAEQTLITYPVDK--HRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGR 236
A V + ++ ++ ++ YPV + + + LF + P ++ Q+ + LVA+G
Sbjct 179 ATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAGE 238
Query 237 GISALP 242
G+ +P
Sbjct 239 GVCIVP 244
Score = 19.6 bits (39), Expect = 1.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 6/32 (19%)
Query 1 MLEIRHLKTLLALREHGSLVAAANDLCLTPSA 32
+ EIR ++ L L VAA +C+ P++
Sbjct 221 LTEIREIQLALGL------VAAGEGVCIVPAS 246
Lambda K H a alpha
0.324 0.138 0.414 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1099854
Database: c1a6ca21c138d6379e7bbe7373b02dbe.SwissProt.fasta
Posted date: May 20, 2024 10:51 PM
Number of letters in database: 4,950
Number of sequences in database: 16
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
