BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5d85b0ea54b28a65c3cc039c25a8215b.SwissProt.fasta
29 sequences; 6,193 total letters
Query= ACIAD2793
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
P9WMC0 HTH-type transcriptional regulator EthR [Mycobacterium tub... 83.6 3e-23
P9WMC1 HTH-type transcriptional regulator EthR [Mycobacterium tub... 83.6 3e-23
Q7TVI1 HTH-type transcriptional regulator EthR [Mycobacterium bov... 83.6 3e-23
A0R666 HTH-type transcriptional regulator EthR [Mycolicibacterium... 80.9 3e-22
Q3J6K8 Transcriptional regulator AcuR [Cereibacter sphaeroides (s... 51.6 2e-11
Q8G2M8 HTH-type transcriptional repressor BepR [Brucella suis bio... 45.8 2e-09
P0ACT1 HTH-type transcriptional regulator AcrR [Shigella flexneri] 42.7 2e-08
P0ACT0 HTH-type transcriptional regulator AcrR [Escherichia coli ... 42.7 2e-08
P0ACS9 HTH-type transcriptional regulator AcrR [Escherichia coli ... 42.7 2e-08
Q5PK70 HTH-type transcriptional repressor FabR [Salmonella paraty... 39.7 2e-07
Q57H90 HTH-type transcriptional repressor FabR [Salmonella choler... 39.7 2e-07
A9MHG9 HTH-type transcriptional repressor FabR [Salmonella arizon... 39.7 2e-07
A6TGE7 HTH-type transcriptional repressor FabR [Klebsiella pneumo... 39.7 2e-07
A8AKV8 HTH-type transcriptional repressor FabR [Citrobacter koser... 39.7 2e-07
Q66G60 HTH-type transcriptional repressor FabR [Yersinia pseudotu... 39.7 2e-07
A4TRG3 HTH-type transcriptional repressor FabR [Yersinia pestis (... 39.7 2e-07
Q1CNP3 HTH-type transcriptional repressor FabR [Yersinia pestis b... 39.7 2e-07
A9R6N6 HTH-type transcriptional repressor FabR [Yersinia pestis b... 39.7 2e-07
Q7CL09 HTH-type transcriptional repressor FabR [Yersinia pestis] 39.7 2e-07
A1AIE5 HTH-type transcriptional repressor FabR [Escherichia coli ... 39.7 2e-07
A8A771 HTH-type transcriptional repressor FabR [Escherichia coli ... 39.7 2e-07
B1XBX4 HTH-type transcriptional repressor FabR [Escherichia coli ... 39.7 2e-07
Q7A964 HTH-type transcriptional repressor FabR [Escherichia coli ... 39.7 2e-07
A7ZUI3 HTH-type transcriptional repressor FabR [Escherichia coli ... 39.7 2e-07
P0ACU5 HTH-type transcriptional repressor FabR [Escherichia coli ... 39.7 2e-07
Q93PU7 Uncharacterized HTH-type transcriptional regulator TtgW [P... 38.1 4e-07
O31500 Uncharacterized HTH-type transcriptional regulator YerO [B... 38.1 9e-07
P39601 Uncharacterized HTH-type transcriptional regulator YwcC [B... 37.4 1e-06
>P9WMC0 HTH-type transcriptional regulator EthR [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=216
Score = 83.6 bits (205), Expect = 3e-23
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (6%)
Query 5 RRRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALR 64
RR + + E IL A+ L +RP +++VD++ + G+ RP FY +F K + L
Sbjct 15 RRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLT 74
Query 65 LVQAIGQELFGIADRWLE------GDNPQEDLRRALVGL-VEVYMKHSHVLRAFAEAASG 117
L+ + + AD L+ D +E++ R + + E + H V RA A +
Sbjct 75 LLDRVVNQ----ADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARAT 130
Query 118 DERVNSIYRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEERYLSDVFGRM 177
V ++ F+Q++I+ A I E+ G + + E A AL + ER L F
Sbjct 131 SVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGE 190
Query 178 PPADPEV-VIRVLQNIWISTLYGSN 201
P+ PE V+ L +IW++++YG N
Sbjct 191 QPSVPEARVLDTLVHIWVTSIYGEN 215
>P9WMC1 HTH-type transcriptional regulator EthR [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=216
Score = 83.6 bits (205), Expect = 3e-23
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (6%)
Query 5 RRRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALR 64
RR + + E IL A+ L +RP +++VD++ + G+ RP FY +F K + L
Sbjct 15 RRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLT 74
Query 65 LVQAIGQELFGIADRWLE------GDNPQEDLRRALVGL-VEVYMKHSHVLRAFAEAASG 117
L+ + + AD L+ D +E++ R + + E + H V RA A +
Sbjct 75 LLDRVVNQ----ADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARAT 130
Query 118 DERVNSIYRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEERYLSDVFGRM 177
V ++ F+Q++I+ A I E+ G + + E A AL + ER L F
Sbjct 131 SVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGE 190
Query 178 PPADPEV-VIRVLQNIWISTLYGSN 201
P+ PE V+ L +IW++++YG N
Sbjct 191 QPSVPEARVLDTLVHIWVTSIYGEN 215
>Q7TVI1 HTH-type transcriptional regulator EthR [Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97)]
Length=216
Score = 83.6 bits (205), Expect = 3e-23
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (6%)
Query 5 RRRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALR 64
RR + + E IL A+ L +RP +++VD++ + G+ RP FY +F K + L
Sbjct 15 RRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLT 74
Query 65 LVQAIGQELFGIADRWLE------GDNPQEDLRRALVGL-VEVYMKHSHVLRAFAEAASG 117
L+ + + AD L+ D +E++ R + + E + H V RA A +
Sbjct 75 LLDRVVNQ----ADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARAT 130
Query 118 DERVNSIYRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEERYLSDVFGRM 177
V ++ F+Q++I+ A I E+ G + + E A AL + ER L F
Sbjct 131 SVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGE 190
Query 178 PPADPEV-VIRVLQNIWISTLYGSN 201
P+ PE V+ L +IW++++YG N
Sbjct 191 QPSVPEARVLDTLVHIWVTSIYGEN 215
>A0R666 HTH-type transcriptional regulator EthR [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=217
Score = 80.9 bits (198), Expect = 3e-22
Identities = 53/197 (27%), Positives = 93/197 (47%), Gaps = 5/197 (3%)
Query 7 RPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLV 66
RP D +E+ IL A++ L + F E++VD++ + G+ RP FY +F K + L L+
Sbjct 17 RPSGDDREAA--ILATAQRLLETKKFAEISVDDLAKGAGISRPTFYFYFPSKEAVLLSLI 74
Query 67 QAIGQELFGIADRWLEG--DNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSI 124
+ + D +E +PQ +RR + + H RA EA
Sbjct 75 DPLIKRADSGFDNAVESMPADPQRAIRRGIEIFFNSFGSHPATARAGTEALKSSPEFKEF 134
Query 125 YRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEER-YLSDVFGRMPPADPE 183
+ +Q++I+A A I E+ G I + A +L + ER ++ + P PE
Sbjct 135 WSGLMQKWIAATAALITAERERGAAPDTIPALDLATSLNLMNERTMMAALADEQPGVAPE 194
Query 184 VVIRVLQNIWISTLYGS 200
V+ L +IW++++YG+
Sbjct 195 KVVATLTHIWLNSIYGT 211
>Q3J6K8 Transcriptional regulator AcuR [Cereibacter sphaeroides
(strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG
2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)]
Length=219
Score = 51.6 bits (122), Expect = 2e-11
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 10/170 (6%)
Query 5 RRRPKHDPKES--EQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLA 62
R RP+ P S Q ++ A + L E+ + + VDE+++ + + +FY +FR+K D
Sbjct 16 RGRPRGAPDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFG 75
Query 63 LRLVQAIGQELFGIADR-WLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDE-- 119
L L++A + D+ +L+G R + E M R G E
Sbjct 76 LALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMG 135
Query 120 RVNSIYRA----FVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWL 165
+ +RA ++ + AQ RE QA G++ D D D A A W+
Sbjct 136 ALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADHDPDALAEA-FWI 184
>Q8G2M8 HTH-type transcriptional repressor BepR [Brucella suis
biovar 1 (strain 1330)]
Length=209
Score = 45.8 bits (107), Expect = 2e-09
Identities = 29/98 (30%), Positives = 48/98 (49%), Gaps = 2/98 (2%)
Query 6 RRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRL 65
RR K + E+ + IL AA+Q ER + T+ E+ G+ R A Y HF DK D+ +
Sbjct 2 RRTKAEAAETREAILLAAEQVFLERGVNQSTLTEIACYAGVTRGAIYFHFEDKLDIFQSI 61
Query 66 V--QAIGQELFGIADRWLEGDNPQEDLRRALVGLVEVY 101
+ QE + + NP L +++V +E++
Sbjct 62 IGRARFPQEEIMLQAARFDHPNPLHILEQSIVAALELF 99
>P0ACT1 HTH-type transcriptional regulator AcrR [Shigella flexneri]
Length=215
Score = 42.7 bits (99), Expect = 2e-08
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query 6 RRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRL 65
R+ K + +E+ Q IL+ A + +++ ++ E+ + G+ R A Y HF+DK DL +
Sbjct 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62
Query 66 VQAIGQELFGIADRW---LEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVN 122
+ + + + GD P LR L+ HVL E+ +ER
Sbjct 63 WELSESNIGELELEYQAKFPGD-PLSVLREILI----------HVL----ESTVTEER-- 105
Query 123 SIYRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEERYLSDVFGRMPPAD 181
R + E I + + E Q Q+++ ++ R +E+ + +M PAD
Sbjct 106 ---RRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDR----IEQTLKHCIEAKMLPAD 157
>P0ACT0 HTH-type transcriptional regulator AcrR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=215
Score = 42.7 bits (99), Expect = 2e-08
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query 6 RRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRL 65
R+ K + +E+ Q IL+ A + +++ ++ E+ + G+ R A Y HF+DK DL +
Sbjct 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62
Query 66 VQAIGQELFGIADRW---LEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVN 122
+ + + + GD P LR L+ HVL E+ +ER
Sbjct 63 WELSESNIGELELEYQAKFPGD-PLSVLREILI----------HVL----ESTVTEER-- 105
Query 123 SIYRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEERYLSDVFGRMPPAD 181
R + E I + + E Q Q+++ ++ R +E+ + +M PAD
Sbjct 106 ---RRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDR----IEQTLKHCIEAKMLPAD 157
>P0ACS9 HTH-type transcriptional regulator AcrR [Escherichia coli
(strain K12)]
Length=215
Score = 42.7 bits (99), Expect = 2e-08
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query 6 RRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRL 65
R+ K + +E+ Q IL+ A + +++ ++ E+ + G+ R A Y HF+DK DL +
Sbjct 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62
Query 66 VQAIGQELFGIADRW---LEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVN 122
+ + + + GD P LR L+ HVL E+ +ER
Sbjct 63 WELSESNIGELELEYQAKFPGD-PLSVLREILI----------HVL----ESTVTEER-- 105
Query 123 SIYRAFVQEFISAAAQHIREEQATGQIQKDIDIDETARALIWLEERYLSDVFGRMPPAD 181
R + E I + + E Q Q+++ ++ R +E+ + +M PAD
Sbjct 106 ---RRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDR----IEQTLKHCIEAKMLPAD 157
>Q5PK70 HTH-type transcriptional repressor FabR [Salmonella paratyphi
A (strain ATCC 9150 / SARB42)]
Length=210
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>Q57H90 HTH-type transcriptional repressor FabR [Salmonella choleraesuis
(strain SC-B67)]
Length=210
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>A9MHG9 HTH-type transcriptional repressor FabR [Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980)]
Length=210
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>A6TGE7 HTH-type transcriptional repressor FabR [Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)]
Length=210
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>A8AKV8 HTH-type transcriptional repressor FabR [Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)]
Length=210
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>Q66G60 HTH-type transcriptional repressor FabR [Yersinia pseudotuberculosis
serotype I (strain IP32953)]
Length=211
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+ + + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 ERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
Score = 17.3 bits (33), Expect = 5.3
Identities = 9/35 (26%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 33 RELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ 67
R+L V++ + + A+Y + R++ LA V+
Sbjct 177 RQLEERLVLQLRMISKGAYYWYRREQEKLAASRVE 211
>A4TRG3 HTH-type transcriptional repressor FabR [Yersinia pestis
(strain Pestoides F)]
Length=211
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+ + + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 ERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
Score = 17.3 bits (33), Expect = 5.3
Identities = 9/35 (26%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 33 RELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ 67
R+L V++ + + A+Y + R++ LA V+
Sbjct 177 RQLEERLVLQLRMISKGAYYWYRREQEKLAASRVE 211
>Q1CNP3 HTH-type transcriptional repressor FabR [Yersinia pestis
bv. Antiqua (strain Nepal516)]
Length=211
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+ + + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 ERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
Score = 17.3 bits (33), Expect = 5.3
Identities = 9/35 (26%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 33 RELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ 67
R+L V++ + + A+Y + R++ LA V+
Sbjct 177 RQLEERLVLQLRMISKGAYYWYRREQEKLAASRVE 211
>A9R6N6 HTH-type transcriptional repressor FabR [Yersinia pestis
bv. Antiqua (strain Angola)]
Length=211
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+ + + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 ERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
Score = 17.3 bits (33), Expect = 5.3
Identities = 9/35 (26%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 33 RELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ 67
R+L V++ + + A+Y + R++ LA V+
Sbjct 177 RQLEERLVLQLRMISKGAYYWYRREQEKLAASRVE 211
>Q7CL09 HTH-type transcriptional repressor FabR [Yersinia pestis]
Length=211
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+ + + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 ERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
Score = 17.3 bits (33), Expect = 5.3
Identities = 9/35 (26%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 33 RELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ 67
R+L V++ + + A+Y + R++ LA V+
Sbjct 177 RQLEERLVLQLRMISKGAYYWYRREQEKLAASRVE 211
>A1AIE5 HTH-type transcriptional repressor FabR [Escherichia coli
O1:K1 / APEC]
Length=215
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>A8A771 HTH-type transcriptional repressor FabR [Escherichia coli
O9:H4 (strain HS)]
Length=215
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>B1XBX4 HTH-type transcriptional repressor FabR [Escherichia coli
(strain K12 / DH10B)]
Length=215
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>Q7A964 HTH-type transcriptional repressor FabR [Escherichia coli
O157:H7]
Length=215
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>A7ZUI3 HTH-type transcriptional repressor FabR [Escherichia coli
O139:H28 (strain E24377A / ETEC)]
Length=215
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 9 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 68
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 69 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 122
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 123 AVAREIQHFIAELADYLELE 142
>P0ACU5 HTH-type transcriptional repressor FabR [Escherichia coli
(strain K12)]
Length=234
Score = 39.7 bits (91), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (46%), Gaps = 15/140 (11%)
Query 13 KESEQEILNAA-KQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQAIG- 70
+++ + ++ AA Q ER F L++ EV R G+ +FY HFRD +L L +V G
Sbjct 28 EKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGL 87
Query 71 ---QELFGIADRWLEGDNPQEDLRRALVGLVEVYMKHSHVLRAFAEAASGDERVNSIYRA 127
Q + R +G + +R ++ +E + + R SG ++ +RA
Sbjct 88 MLRQLMRQARQRIAKGGSV---IRTSVSTFMEFIGNNPNAFRLLLRERSG---TSAAFRA 141
Query 128 FV----QEFISAAAQHIREE 143
V Q FI+ A ++ E
Sbjct 142 AVAREIQHFIAELADYLELE 161
>Q93PU7 Uncharacterized HTH-type transcriptional regulator TtgW
[Pseudomonas putida (strain DOT-T1E)]
Length=134
Score = 38.1 bits (87), Expect = 4e-07
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query 6 RRPKHDPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRL 65
R+ + KE+ Q I++AA + + + T+D++ R+ G+ R A Y HF K L +
Sbjct 3 RKTAAEAKETRQRIIDAALEVFVAQGVPDATLDQIARKAGVTRGAVYWHFNGK----LEV 58
Query 66 VQAI 69
+QA+
Sbjct 59 LQAV 62
>O31500 Uncharacterized HTH-type transcriptional regulator YerO
[Bacillus subtilis (strain 168)]
Length=289
Score = 38.1 bits (87), Expect = 9e-07
Identities = 23/94 (24%), Positives = 45/94 (48%), Gaps = 3/94 (3%)
Query 14 ESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ-AIGQE 72
E ++ I+ + + ++ F T+ E+ G+ + AFY+HF+ K L L + IG
Sbjct 3 EKKERIIKTSIRLFAKKGFAATTIQEIASECGISKGAFYLHFKSKEALLLSACEYYIGMS 62
Query 73 LFGI--ADRWLEGDNPQEDLRRALVGLVEVYMKH 104
+ + + L G P+E L++ + E + H
Sbjct 63 MNKMKNIEEDLAGKPPKEVLKKQIGAQFEDFRDH 96
>P39601 Uncharacterized HTH-type transcriptional regulator YwcC
[Bacillus subtilis (strain 168)]
Length=223
Score = 37.4 bits (85), Expect = 1e-06
Identities = 16/51 (31%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 17 QEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVHFRDKHDLALRLVQ 67
+ ++A L +R + ++V+++ R G + AFYVHF K D L L++
Sbjct 15 ESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFLLYLLE 65
Score = 16.9 bits (32), Expect = 7.1
Identities = 6/44 (14%), Positives = 21/44 (48%), Gaps = 0/44 (0%)
Query 11 DPKESEQEILNAAKQFLNERPFRELTVDEVMRRTGLKRPAFYVH 54
+ ++ +++I+ + + LT+DE + ++Y++
Sbjct 65 EKRQMKKKIIIGYLDQMERESVKSLTLDEAAKHAAELLYSYYIN 108
Lambda K H a alpha
0.324 0.138 0.409 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 786414
Database: 5d85b0ea54b28a65c3cc039c25a8215b.SwissProt.fasta
Posted date: May 20, 2024 10:34 PM
Number of letters in database: 6,193
Number of sequences in database: 29
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
