BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 75841f5f782730722d94d5e66c644560.TrEMBL.fasta
2 sequences; 978 total letters
Query= ACIAD2701
Length=119
Score E
Sequences producing significant alignments: (Bits) Value
Q6F911 Uncharacterized protein [Acinetobacter baylyi (strain ATCC... 240 3e-88
A0A2H0GZA4 PKD domain-containing protein [Bacteroidetes bacterium... 40.0 8e-09
>Q6F911 Uncharacterized protein [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=118
Score = 240 bits (613), Expect = 3e-88
Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%)
Query 1 MSIILARIKVLSKMNKLPSRGEVNIKDLKYRDKIADPIQRHATTNFEYFSKTGKALSYIG 60
MSIILARIKVLSKMNKLPSRGEVNIKDLKYRDKIADPIQRHATTNFEYFSKTGKALSYIG
Sbjct 1 MSIILARIKVLSKMNKLPSRGEVNIKDLKYRDKIADPIQRHATTNFEYFSKTGKALSYIG 60
Query 61 IGFIGYELYNNPNYTIDDALIDLGEISRSGNSTLFTPSITFPADSSGNTNYYYQDYRN 118
IGFIGYELYNNPNYTIDDALIDLGEISRSGNSTLFTPSITFPADSSGNTNYYYQDYRN
Sbjct 61 IGFIGYELYNNPNYTIDDALIDLGEISRSGNSTLFTPSITFPADSSGNTNYYYQDYRN 118
>A0A2H0GZA4 PKD domain-containing protein [Bacteroidetes bacterium
CG18_big_fil_WC_8_21_14_2_50_41_14]
Length=860
Score = 40.0 bits (92), Expect = 8e-09
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 7/65 (11%)
Query 56 LSYIGIGFI---GYELYNNPNYTIDDALIDLGEISRSGNSTLFTPSITF-PADSSGNTNY 111
L +G G I G+ L +NPN T++D +I+LG I+ GN F+ +F P + NT Y
Sbjct 390 LDNLGSGQITRHGFCLSDNPNPTVNDNMINLGAITELGN---FSYDYSFAPPNLIPNTKY 446
Query 112 YYQDY 116
YY+ Y
Sbjct 447 YYKAY 451
Score = 16.2 bits (30), Expect = 1.1
Identities = 5/10 (50%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 57 SYIGIGFIGY 66
S+ G+G GY
Sbjct 809 SFYGLGSYGY 818
Score = 15.8 bits (29), Expect = 1.5
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (22%)
Query 42 ATTNFEYFSKTGKALS---YI------GIGFIGYELYNNPN 73
A T F Y +G+ +S YI G G E Y PN
Sbjct 474 APTLFGYEPGSGETVSGNVYILISIEDGCGLDKAEFYVKPN 514
Score = 15.8 bits (29), Expect = 1.5
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 0/23 (0%)
Query 90 GNSTLFTPSITFPADSSGNTNYY 112
G + +T SIT G T +
Sbjct 659 GLTDTYTKSITVSNGGGGTTGTF 681
Score = 15.0 bits (27), Expect = 2.7
Identities = 4/9 (44%), Positives = 8/9 (89%), Gaps = 0/9 (0%)
Query 11 LSKMNKLPS 19
++ MN++PS
Sbjct 193 IAGMNRIPS 201
Score = 13.9 bits (24), Expect = 6.5
Identities = 7/19 (37%), Positives = 10/19 (53%), Gaps = 4/19 (21%)
Query 99 ITFPADSSGNTN----YYY 113
I+ P S NT+ +YY
Sbjct 113 ISIPFKSGMNTSDMRVFYY 131
Score = 13.9 bits (24), Expect = 6.5
Identities = 4/6 (67%), Positives = 4/6 (67%), Gaps = 0/6 (0%)
Query 108 NTNYYY 113
N N YY
Sbjct 315 NDNIYY 320
Lambda K H a alpha
0.322 0.140 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 85008
Database: 75841f5f782730722d94d5e66c644560.TrEMBL.fasta
Posted date: Jun 3, 2024 12:20 PM
Number of letters in database: 978
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
