Located at
Genoscope
- the French National Sequencing Center - our bioinformatic team (
Atelier de Génomique Comparative )
has developed the
MicroScope platform to support microbial genomes (re)annotation projects; it is made of three major components (Vallenet et al., 2006) :
- A set of syntactic and functional annotation tools.
- A relational database, Prokaryotic Genome DataBase, (PkGDB) which is linked to metabolic pathway databases
(MicroCyc) created using the
Pathway Tools software.
- A graphical interface, Magnifying Genome
(MaGe), which allows to perform relevant expert annotation
(combinaison of synteny results and metabolic network predictions).