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RNA-Seq analysis
Helicobacter pylori public data (Sharma et al, 2010, Nature 464:250-255) : RNAseq Projects
| Mapping Overview | Raw Read Count | Analysis | IGV |
AS
SSAHA2 version 2.5.1 dir mRNAseq solexa
| Total read number | 16731201 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 4426392 | 26.46 % | |
| Nb of reads mapped at least once | 12304809 | 73.54 % | |
| Nb of reads mapped on rRNA | 3612363 | 21.59 % | |
| Nb of reliable reads | 8398778 | 50.20 % | |
| Nb of reads kept on chromosome HP NC_000915 | 8398778 | 50.2 % | |
| Total read count on genomic objects (except rRNA) for Organism | 8442766 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome HP NC_000915 | 8442766 | 100 % | |
| Download forward / reverse wig file | Download | ||
AG
SSAHA2 version 2.5.1 dir mRNAseq solexa
| Total read number | 18060205 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 7983601 | 44.21 % | |
| Nb of reads mapped at least once | 10076604 | 55.79 % | |
| Nb of reads mapped on rRNA | 5038296 | 27.90 % | |
| Nb of reliable reads | 5032135 | 27.86 % | |
| Nb of reads kept on chromosome HP NC_000915 | 5032135 | 27.86 % | |
| Total read count on genomic objects (except rRNA) for Organism | 4692923 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome HP NC_000915 | 4692923 | 100 % | |
| Download forward / reverse wig file | Download | ||
HU
SSAHA2 version 2.5.1 dir mRNAseq solexa
| Total read number | 23350314 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 12043655 | 51.58 % | |
| Nb of reads mapped at least once | 11306659 | 48.42 % | |
| Nb of reads mapped on rRNA | 4659667 | 19.96 % | |
| Nb of reliable reads | 6582662 | 28.19 % | |
| Nb of reads kept on chromosome HP NC_000915 | 6582662 | 28.19 % | |
| Total read count on genomic objects (except rRNA) for Organism | 5981039 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome HP NC_000915 | 5981039 | 100 % | |
| Download forward / reverse wig file | Download | ||
ML
SSAHA2 version 2.5.1 dir mRNAseq solexa
| Total read number | 18694705 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 5216811 | 27.91 % | |
| Nb of reads mapped at least once | 13477894 | 72.09 % | |
| Nb of reads mapped on rRNA | 8915109 | 47.69 % | |
| Nb of reliable reads | 5451602 | 29.16 % | |
| Nb of reads kept on chromosome HP NC_000915 | 5451602 | 29.16 % | |
| Total read count on genomic objects (except rRNA) for Organism | 4359505 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome HP NC_000915 | 4359505 | 100 % | |
| Download forward / reverse wig file | Download | ||
PL
SSAHA2 version 2.5.1 dir mRNAseq solexa
| Total read number | 6141018 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 3810013 | 62.04 % | |
| Nb of reads mapped at least once | 2331005 | 37.96 % | |
| Nb of reads mapped on rRNA | 1021000 | 16.63 % | |
| Nb of reliable reads | 1294519 | 21.08 % | |
| Nb of reads kept on chromosome HP NC_000915 | 1294519 | 21.08 % | |
| Total read count on genomic objects (except rRNA) for Organism | 1247189 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome HP NC_000915 | 1247189 | 100 % | |
| Download forward / reverse wig file | Download | ||
