| Label | Strand | Begin | End | Length (bp) | Coding Probability | Best similarity | Evalue | % identity | Sequence |
| aq_018.1 | direct | 8457 | 8675 | 219 | 0.533715 | P56613 50S RIBOSOMAL PROTEIN L29. | 8e-18 | 65 | View |
| aq_067.1 | reverse | 44268 | 44501 | 234 | 0.534554 | Q9ZHA1 YLMG. | 1e-05 | 34 | View |
| aq_104.1 | reverse | 65831 | 66151 | 321 | 0.585963 | No significant database matches | | | View |
| aq_106.1 | reverse | 66126 | 66476 | 351 | 0.751685 | Q9V0Z3 HYPOTHETICAL 13.8 KDA PROTEIN. | 6e-38 | 71 | View |
| aq_114.1 | reverse | 72246 | 72563 | 318 | 0.494785 | No significant database matches | | | View |
| aq_159.1 | reverse | 98270 | 98434 | 165 | 0.508945 | O25465 HYPOTHETICAL 39.6 KDA PROTEIN. | 3e-11 | 66 | View |
| aq_184.1 | reverse | 114024 | 114164 | 141 | 0.575563 | AAF42010 Guanylate kinase. | 3e-06 | 51 | View |
| aq_227.1 | reverse | 141315 | 141467 | 153 | 0.719597 | Q52589 CARBON MONOXIDE OXYGENASE [CYTOCHROME B-561], SMALL CHAIN (E | 1e-06 | 45 | View |
| aq_227.2 | reverse | 141576 | 141782 | 207 | 0.575548 | O30328 ALDEHYDE DEHYDROGENASE SUBUNIT III. | 1e-15 | 58 | View |
| aq_255.1 | direct | 163682 | 164107 | 426 | 0.787961 | No significant database matches | | | View |
| aq_262.1 | direct | 168491 | 168715 | 225 | 0.512213 | CAB69769 Hypothetical 13.6 kDa protein. | 7e-08 | 50 | View |
| aq_262.2 | direct | 168669 | 168857 | 189 | 0.432197 | O27346 HYPOTHETICAL PROTEIN MTH1285. | 2e-13 | 56 | View |
| aq_274.1 | direct | 178296 | 178610 | 315 | 0.832724 | O29240 MOLYBDENUM-PTERIN-BINDING PROTEIN (MOPB). | 1e-07 | 31 | View |
| aq_308.1 | direct | 203329 | 203601 | 273 | 0.700870 | O28268 CONSERVED HYPOTHETICAL PROTEIN. | 0.0001 | 45 | View |
| aq_308.2 | direct | 203579 | 203860 | 282 | 0.489153 | O67739 HYPOTHETICAL 16.0 KDA PROTEIN. | 4e-06 | 38 | View |
| aq_334.1 | reverse | 216951 | 217223 | 273 | 0.813292 | AAF41627 Conserved hypothetical protein. | 6e-15 | 52 | View |
| aq_340.1 | direct | 221116 | 221397 | 282 | 0.715593 | O67430 HYPOTHETICAL 122.9 KDA PROTEIN. | 3e-12 | 45 | View |
| aq_340.2 | direct | 221693 | 221839 | 147 | 0.433076 | O67430 HYPOTHETICAL 122.9 KDA PROTEIN. | 0.0008 | 47 | View |
| aq_360.1 | direct | 238323 | 238658 | 336 | 0.767986 | No significant database matches | | | View |
| aq_367.1 | reverse | 245063 | 245341 | 279 | 0.776783 | Q57831 HYPOTHETICAL PROTEIN MJ0386. | 1e-12 | 43 | View |
| aq_388.1 | direct | 264487 | 264747 | 261 | 0.790845 | Q9PP75 HYPOTHETICAL PROTEIN CJ0848C. | 7e-14 | 47 | View |
| aq_388.2 | direct | 264844 | 265083 | 240 | 0.490800 | P54436 HYPOTHETICAL 8.2 KDA PROTEIN IN BLTR-SPOIIIC INTER | 5e-16 | 52 | View |
| aq_465.1 | direct | 314245 | 314640 | 396 | 0.774741 | O67158 HYPOTHETICAL 49.1 KDA PROTEIN. | 5e-08 | 25 | View |
| aq_474.1 | reverse | 321687 | 322118 | 432 | 0.838842 | O67227 HYPOTHETICAL 14.9 KDA PROTEIN. | 6e-24 | 41 | View |
| aq_481.1 | reverse | 326381 | 326746 | 366 | 0.780216 | No significant database matches | | | View |
| aq_484.1 | direct | 327993 | 328337 | 345 | 0.540198 | No significant database matches | | | View |
| aq_507.1 | direct | 344254 | 344661 | 408 | 0.446888 | No significant database matches | | | View |
| aq_534.1 | direct | 365316 | 365630 | 315 | 0.635013 | No significant database matches | | | View |
| aq_568.1 | direct | 388262 | 388567 | 306 | 0.655608 | No significant database matches | | | View |
| aq_628.1 | direct | 428194 | 428466 | 273 | 0.659024 | P74060 HYPOTHETICAL 11.7 KDA PROTEIN SLR0821. | 7e-24 | 58 | View |
| aq_629.1 | reverse | 431954 | 432157 | 204 | 0.745529 | O84491 HYPOTHETICAL 38.6 KDA PROTEIN. | 0.0003 | 37 | View |
| aq_635.1 | reverse | 435894 | 436256 | 363 | 0.788790 | P32662 PHOSPHOGLYCOLATE PHOSPHATASE (EC 3.1.3.18) (PGP). | 0.0003 | 36 | View |
| aq_635.2 | reverse | 436229 | 436579 | 351 | 0.768906 | O05163 IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE (FRAGMENT). | 6e-06 | 34 | View |
| aq_638.1 | reverse | 437561 | 437938 | 378 | 0.638994 | O66719 HYPOTHETICAL 14.9 KDA PROTEIN. | 1e-09 | 33 | View |
| aq_652.1 | reverse | 446771 | 447001 | 231 | 0.834369 | Q9X1Q0 ACYLPHOSPHATASE, PUTATIVE. | 6e-12 | 44 | View |
| aq_657.1 | direct | 450543 | 450830 | 288 | 0.501421 | BAA16415 Ferredoxin. | 5e-09 | 34 | View |
| aq_782.1 | reverse | 540879 | 541319 | 441 | 0.819169 | No significant database matches | | | View |
| aq_867a.1 | direct | 600599 | 600943 | 345 | 0.591158 | No significant database matches | | | View |
| aq_873.1 | direct | 604575 | 604778 | 204 | 0.458729 | Q10608 50S RIBOSOMAL PROTEIN L31. | 2e-13 | 64 | View |
| aq_876.1 | reverse | 605873 | 606106 | 234 | 0.455308 | Q9RWB8 CONSERVED HYPOTHETICAL PROTEIN. | 4e-09 | 42 | View |
| aq_881.1 | reverse | 609993 | 610409 | 417 | 0.802132 | No significant database matches | | | View |
| aq_899.1 | direct | 621596 | 621871 | 276 | 0.642704 | O67415 HYPOTHETICAL PROTEIN AQ_1421. | 5e-12 | 37 | View |
| aq_900.1 | direct | 622101 | 622361 | 261 | 0.526731 | P32860 HYPOTHETICAL 29.2 KDA PROTEIN IN SPC42-PTM1 INTERG | 0.001 | 34 | View |
| aq_904.1 | reverse | 624080 | 624280 | 201 | 0.466191 | P10955 SENSOR PROTEIN FIXL (EC 2.7.3.-). | 4e-07 | 39 | View |
| aq_932.1 | reverse | 644299 | 644529 | 231 | 0.674421 | Q9RHX1 PURORF. | 1e-08 | 46 | View |
| aq_944.1 | direct | 651072 | 651362 | 291 | 0.454441 | O28137 PROBABLE THIOREDOXIN. | 9e-07 | 36 | View |
| aq_1067.1 | direct | 739492 | 739746 | 255 | 0.682645 | O32119 YUTI PROTEIN. | 1e-14 | 54 | View |
| aq_1106.1 | direct | 773849 | 774082 | 234 | 0.660928 | Q9ZIM8 MOAD PROTEIN. | 2e-06 | 49 | View |
| aq_1127.1 | reverse | 788878 | 789198 | 321 | 0.747630 | No significant database matches | | | View |
| aq_1148.1 | reverse | 805453 | 805758 | 306 | 0.704682 | No significant database matches | | | View |
| aq_1157.1 | reverse | 814664 | 814912 | 249 | 0.751181 | Q9PHP3 HYDROGENASE ISOENZYMES FORMATION PROTEIN. | 5e-16 | 58 | View |
| aq_1171a.1 | direct | 822811 | 823140 | 330 | 0.688433 | No significant database matches | | | View |
| aq_1220.1 | reverse | 858804 | 858980 | 177 | 0.736035 | O26942 FERREDOXIN. | 0.001 | 43 | View |
| aq_1250.1 | reverse | 882182 | 882670 | 489 | 0.659519 | AAF42287 Thioredoxin, putative. | 0.0001 | 23 | View |
| aq_1265.1 | direct | 895364 | 895714 | 351 | 0.717019 | No significant database matches | | | View |
| aq_1279.1 | direct | 905722 | 906018 | 297 | 0.684893 | Q9ZBR8 HYPOTHETICAL 8.3 KDA PROTEIN. | 2e-10 | 38 | View |
| aq_1288.1 | reverse | 912510 | 912938 | 429 | 0.783471 | No significant database matches | | | View |
| aq_1398.1 | direct | 993020 | 993535 | 516 | 0.750149 | No significant database matches | | | View |
| aq_1453.1 | direct | 1038025 | 1038429 | 405 | 0.725867 | No significant database matches | | | View |
| aq_1457.1 | direct | 1039606 | 1039791 | 186 | 0.444290 | Q9WY54 AMINOMETHYLTRANSFERASE. | 7e-07 | 61 | View |
| aq_1470.1 | reverse | 1048631 | 1048954 | 324 | 0.767992 | No significant database matches | | | View |
| aq_1593.1 | direct | 1122205 | 1122516 | 312 | 0.708392 | No significant database matches | | | View |
| aq_1607.1 | direct | 1130378 | 1130689 | 312 | 0.755688 | No significant database matches | | | View |
| aq_1622.1 | direct | 1139479 | 1139706 | 228 | 0.605005 | P46797 FERREDOXIN. | 6e-06 | 38 | View |
| aq_1727.1 | reverse | 1216166 | 1216507 | 342 | 0.708751 | No significant database matches | | | View |
| aq_1727.2 | reverse | 1216821 | 1217123 | 303 | 0.733695 | Q58396 HYPOTHETICAL PROTEIN MJ0989. | 0.0005 | 33 | View |
| aq_1727.3 | reverse | 1217123 | 1217359 | 237 | 0.770908 | O29697 CONSERVED HYPOTHETICAL PROTEIN. | 1e-20 | 53 | View |
| aq_1747.1 | reverse | 1231326 | 1231631 | 306 | 0.772173 | No significant database matches | | | View |
| aq_1761.1 | reverse | 1241057 | 1241488 | 432 | 0.863977 | O26513 CONSERVED PROTEIN. | 0.0003 | 34 | View |
| aq_1774.1 | reverse | 1254348 | 1254809 | 462 | 0.762122 | No significant database matches | | | View |
| aq_1823.1 | direct | 1283352 | 1283561 | 210 | 0.570891 | O67509 GLIDING MOTILITY PROTEIN. | 8e-12 | 57 | View |
| aq_1825.1 | reverse | 1285478 | 1285783 | 306 | 0.458984 | No significant database matches | | | View |
| aq_1829.1 | reverse | 1287969 | 1288373 | 405 | 0.752880 | O66688 HYPOTHETICAL 16.5 KDA PROTEIN. | 8e-08 | 31 | View |
| aq_1863.1 | direct | 1314984 | 1315346 | 363 | 0.532374 | O51955 ORF H0006. | 5e-07 | 26 | View |
| aq_1871.1 | direct | 1321161 | 1321766 | 606 | 0.673265 | No significant database matches | | | View |
| aq_1908.1 | reverse | 1344075 | 1344287 | 213 | 0.562462 | O31796 YMAH PROTEIN. | 2e-11 | 48 | View |
| aq_1910.1 | direct | 1346457 | 1346933 | 477 | 0.491049 | No significant database matches | | | View |
| aq_1912.1 | direct | 1348376 | 1348678 | 303 | 0.625065 | Q58721 HYPOTHETICAL PROTEIN MJ1325. | 2e-09 | 47 | View |
| aq_1930a.1 | direct | 1358431 | 1358625 | 195 | 0.536738 | Q9RSS5 PREPROTEIN TRANSLOCASE, SECE SUBUNIT. | 1e-06 | 40 | View |
| aq_1980.1 | reverse | 1394154 | 1394483 | 330 | 0.725033 | No significant database matches | | | View |
| aq_2002.1 | reverse | 1409144 | 1409455 | 312 | 0.755442 | No significant database matches | | | View |
| aq_2005.1 | direct | 1410476 | 1410982 | 507 | 0.807617 | O67199 HYPOTHETICAL 21.4 KDA PROTEIN. | 5e-06 | 28 | View |
| aq_2021.1 | direct | 1423818 | 1424111 | 294 | 0.734065 | O30208 CONSERVED HYPOTHETICAL PROTEIN. | 2e-24 | 54 | View |
| aq_2128.1 | direct | 1499832 | 1500083 | 252 | 0.618276 | AAF78799 Hypothetical 11.8 kDa protein. | 0.0004 | 37 | View |
| aq_2129.1 | direct | 1501078 | 1501428 | 351 | 0.602230 | No significant database matches | | | View |
| aq_2178.1 | reverse | 1533414 | 1533572 | 159 | 0.737713 | O32583 THIS PROTEIN. | 9e-05 | 36 | View |