| Label | Strand | Begin | End | Length (bp) | Coding Probability | Best similarity | Evalue | % identity | Sequence |
| APE0067.1 | direct | 45961 | 46419 | 459 | 0.648933 | No significant database matches | | | View |
| APE0273.1 | reverse | 199072 | 199308 | 237 | 0.586476 | Q9YFG3 HYPOTHETICAL 8.9 KDA PROTEIN APES010. | 3e-08 | 55 | View |
| APE0275.1 | reverse | 201928 | 202152 | 225 | 0.535552 | O73964 HYPOTHETICAL 8.5 KDA PROTEIN PHS011. | 5e-07 | 40 | View |
| APE0277.1 | reverse | 203660 | 203926 | 267 | 0.645569 | O29658 CONSERVED HYPOTHETICAL PROTEIN. | 4e-08 | 44 | View |
| APE0290.1 | reverse | 212080 | 212259 | 180 | 0.576159 | Q9YG15 163AA LONG HYPOTHETICAL BACTERIOFERRITIN COMIGRATORY PROTEIN | 1e-05 | 50 | View |
| APE0295.1 | reverse | 214838 | 215152 | 315 | 0.614152 | No significant database matches | | | View |
| APE0362.1 | reverse | 258041 | 258223 | 183 | 0.786531 | P54035 50S RIBOSOMAL PROTEIN L29P. | 3e-08 | 52 | View |
| APE0442.1 | reverse | 309604 | 309918 | 315 | 0.602762 | No significant database matches | | | View |
| APE0471.1 | reverse | 328350 | 328667 | 318 | 0.417272 | No significant database matches | | | View |
| APE0548.1 | direct | 375992 | 376312 | 321 | 0.746617 | O74001 50S RIBOSOMAL PROTEIN L21E. | 2e-17 | 61 | View |
| APE0620.1 | direct | 425589 | 425867 | 279 | 0.751543 | Q9UZ74 HYPOTHETICAL 11.2 KDA PROTEIN. | 7e-20 | 51 | View |
| APE0659.1 | reverse | 441797 | 442057 | 261 | 0.735503 | O73983 75AA LONG HYPOTHETICAL REGULATORY PROTEIN ASNC. | 4e-12 | 46 | View |
| APE0723.1 | reverse | 482260 | 482580 | 321 | 0.630763 | No significant database matches | | | View |
| APE0730.1 | reverse | 487555 | 488331 | 777 | 0.882913 | No significant database matches | | | View |
| APE0749.1 | direct | 498039 | 498332 | 294 | 0.812518 | Q9V138 PROBABLE TRANSLATION INITIATION FACTOR 1A (EIF-1A) | 6e-16 | 40 | View |
| APE0851.1 | direct | 559676 | 559939 | 264 | 0.681123 | Q9YDR7 HYPOTHETICAL 10.8 KDA PROTEIN APE0850. | 4e-12 | 41 | View |
| APES039.1 | direct | 578331 | 578573 | 243 | 0.568479 | O28013 HYPOTHETICAL 29.4 KDA PROTEIN. | 0.001 | 48 | View |
| APE0958.1 | reverse | 627084 | 627374 | 291 | 0.741134 | O29386 PUTATIVE SNRNP SM-LIKE PROTEIN. | 5e-06 | 43 | View |
| APE0973.1 | reverse | 638755 | 639105 | 351 | 0.785210 | No significant database matches | | | View |
| APE0978.1 | reverse | 642577 | 642861 | 285 | 0.687773 | P54053 50S RIBOSOMAL PROTEIN L34E. | 3e-10 | 41 | View |
| APE1084.1 | reverse | 690353 | 690616 | 264 | 0.843897 | P38613 50S RIBOSOMAL PROTEIN LX. | 2e-08 | 34 | View |
| APE1087.1 | reverse | 691743 | 691895 | 153 | 0.622541 | P13005 50S RIBOSOMAL PROTEIN L39E (L46E). | 4e-05 | 65 | View |
| APE1088.1 | reverse | 691950 | 692294 | 345 | 0.765047 | P56813 HYPOTHETICAL PROTEIN PAB0620. | 4e-13 | 52 | View |
| APE1132.1 | direct | 708619 | 708807 | 189 | 0.505232 | P54031 30S RIBOSOMAL PROTEIN S27AE. | 4e-05 | 44 | View |
| APE1209.1 | direct | 759592 | 759786 | 195 | 0.553274 | Q9YBB6 393AA LONG HYPOTHETICAL ACYL-COA DEHYDROGENASE. | 2e-05 | 57 | View |
| APE1209.2 | reverse | 759852 | 760274 | 423 | 0.784060 | O29927 CONSERVED HYPOTHETICAL PROTEIN. | 2e-19 | 37 | View |
| APES044.1 | direct | 760854 | 761126 | 273 | 0.702585 | P16219 ACYL-COA DEHYDROGENASE, SHORT-CHAIN SPECIFIC, MITO | 2e-07 | 30 | View |
| APE1275.1 | direct | 807492 | 807782 | 291 | 0.753104 | P96000 UDP-N-ACETYLGLUCOSAMINE-DOLICHYL-P N-ACGLUNH-PHOSPHOTRANSFER | 0.0004 | 44 | View |
| APE1437.1 | reverse | 913926 | 914255 | 330 | 0.615825 | No significant database matches | | | View |
| APE1460.1 | reverse | 928081 | 928503 | 423 | 0.787989 | O59188 151AA LONG HYPOTHETICAL TRANSCRIPTIONAL REGULATOR. | 6e-18 | 35 | View |
| APE1517.1 | reverse | 960110 | 960433 | 324 | 0.564185 | No significant database matches | | | View |
| APE1587.1 | reverse | 1007463 | 1007606 | 144 | 0.573667 | Q9Y9D3 405AA LONG HYPOTHETICAL ACYL-COA DEHYDROGENASE. | 0.0003 | 50 | View |
| APE1602.1 | direct | 1016477 | 1016743 | 267 | 0.809230 | O59372 HYPOTHETICAL 29.8 KDA PROTEIN PH1744. | 0.0001 | 37 | View |
| APE1722.1 | direct | 1088727 | 1089200 | 474 | 0.657113 | No significant database matches | | | View |
| APE1799.1 | direct | 1134225 | 1134479 | 255 | 0.611746 | O73983 75AA LONG HYPOTHETICAL REGULATORY PROTEIN ASNC. | 3e-08 | 40 | View |
| APE2022.1 | direct | 1275198 | 1275542 | 345 | 0.625019 | No significant database matches | | | View |
| APE2141.1 | reverse | 1352526 | 1352738 | 213 | 0.631825 | Q9RXL8 CONSERVED HYPOTHETICAL PROTEIN. | 0.001 | 37 | View |
| APE2154.1 | direct | 1365603 | 1365833 | 231 | 0.741175 | O27739 COBALT TRANSPORT ATP-BINDING PROTEIN O. | 2e-06 | 39 | View |
| APE2244.1 | reverse | 1421665 | 1421967 | 303 | 0.690028 | Q9YDQ5 HYPOTHETICAL 11.9 KDA PROTEIN APE0862. | 1e-06 | 34 | View |
| APE2244.2 | reverse | 1422031 | 1422198 | 168 | 0.642736 | Q9YDQ9 HYPOTHETICAL 59.0 KDA PROTEIN APE0858. | 1e-22 | 87 | View |
| APE2329.1 | direct | 1489114 | 1489398 | 285 | 0.636737 | O96258 RIBOSOMAL PROTEIN S26. | 6e-08 | 35 | View |
| APE2436.1 | reverse | 1543137 | 1543478 | 342 | 0.859551 | O28738 HYPOTHETICAL 13.2 KDA PROTEIN. | 2e-09 | 31 | View |
| APE2459.1 | direct | 1561090 | 1561470 | 381 | 0.566595 | No significant database matches | | | View |
| APE2618.1 | reverse | 1667916 | 1668176 | 261 | 0.542736 | Q60288 HYPOTHETICAL PROTEIN MJECL30. | 1e-05 | 38 | View |